data.py
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import logging
import numpy as np
import os
import math
import random
import torch
import torchvision
from PIL import Image
from torch.utils.data import SubsetRandomSampler, Sampler, Subset, ConcatDataset
import torch.distributed as dist
from torchvision.transforms import transforms
from sklearn.model_selection import StratifiedShuffleSplit
from theconf import Config as C
sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '..')))
from FastAutoAugment.archive import arsaug_policy, autoaug_policy, autoaug_paper_cifar10, fa_reduced_cifar10, fa_reduced_svhn, fa_resnet50_rimagenet
from FastAutoAugment.augmentations import *
from FastAutoAugment.common import get_logger
from FastAutoAugment.imagenet import ImageNet
from FastAutoAugment.networks.efficientnet_pytorch.model import EfficientNet
logger = get_logger('Fast AutoAugment')
logger.setLevel(logging.INFO)
_IMAGENET_PCA = {
'eigval': [0.2175, 0.0188, 0.0045],
'eigvec': [
[-0.5675, 0.7192, 0.4009],
[-0.5808, -0.0045, -0.8140],
[-0.5836, -0.6948, 0.4203],
]
}
_CIFAR_MEAN, _CIFAR_STD = (0.4914, 0.4822, 0.4465), (0.2023, 0.1994, 0.2010)
def get_dataloaders(dataset, batch, dataroot, split=0.15, split_idx=0, multinode=False, target_lb=-1):
if 'cifar' in dataset or 'svhn' in dataset:
transform_train = transforms.Compose([
transforms.RandomCrop(32, padding=4),
transforms.RandomHorizontalFlip(),
transforms.ToTensor(),
transforms.Normalize(_CIFAR_MEAN, _CIFAR_STD),
])
transform_test = transforms.Compose([
transforms.ToTensor(),
transforms.Normalize(_CIFAR_MEAN, _CIFAR_STD),
])
elif 'imagenet' in dataset:
input_size = 224
sized_size = 256
if 'efficientnet' in C.get()['model']['type']:
input_size = EfficientNet.get_image_size(C.get()['model']['type'])
sized_size = input_size + 32 # TODO
# sized_size = int(round(input_size / 224. * 256))
# sized_size = input_size
logger.info('size changed to %d/%d.' % (input_size, sized_size))
transform_train = transforms.Compose([
EfficientNetRandomCrop(input_size),
transforms.Resize((input_size, input_size), interpolation=Image.BICUBIC),
# transforms.RandomResizedCrop(input_size, scale=(0.1, 1.0), interpolation=Image.BICUBIC),
transforms.RandomHorizontalFlip(),
transforms.ColorJitter(
brightness=0.4,
contrast=0.4,
saturation=0.4,
),
transforms.ToTensor(),
Lighting(0.1, _IMAGENET_PCA['eigval'], _IMAGENET_PCA['eigvec']),
transforms.Normalize(mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225])
])
transform_test = transforms.Compose([
EfficientNetCenterCrop(input_size),
transforms.Resize((input_size, input_size), interpolation=Image.BICUBIC),
transforms.ToTensor(),
transforms.Normalize(mean=[0.485, 0.456, 0.406], std=[0.229, 0.224, 0.225])
])
elif 'BraTS' in dataset:
input_size = 240
sized_size = 256
if 'efficientnet' in C.get()['model']['type']:
input_size = EfficientNet.get_image_size(C.get()['model']['type'])
sized_size = input_size + 16 # TODO
logger.info('size changed to %d/%d.' % (input_size, sized_size))
transform_train = transforms.Compose([
EfficientNetRandomCrop(input_size),
transforms.Resize((input_size, input_size), interpolation=Image.BICUBIC),
transforms.RandomHorizontalFlip(),
transforms.ToTensor(),
])
transform_test = transforms.Compose([
EfficientNetCenterCrop(input_size),
transforms.Resize((input_size, input_size), interpolation=Image.BICUBIC),
transforms.ToTensor(),
])
else:
raise ValueError('dataset=%s' % dataset)
total_aug = augs = None
if isinstance(C.get()['aug'], list):
logger.debug('augmentation provided.')
transform_train.transforms.insert(0, Augmentation(C.get()['aug']))
else:
logger.debug('augmentation: %s' % C.get()['aug'])
if C.get()['aug'] == 'fa_reduced_cifar10':
transform_train.transforms.insert(0, Augmentation(fa_reduced_cifar10()))
elif C.get()['aug'] == 'fa_reduced_imagenet':
transform_train.transforms.insert(0, Augmentation(fa_resnet50_rimagenet()))
elif C.get()['aug'] == 'fa_reduced_svhn':
transform_train.transforms.insert(0, Augmentation(fa_reduced_svhn()))
elif C.get()['aug'] == 'arsaug':
transform_train.transforms.insert(0, Augmentation(arsaug_policy()))
elif C.get()['aug'] == 'autoaug_cifar10':
transform_train.transforms.insert(0, Augmentation(autoaug_paper_cifar10()))
elif C.get()['aug'] == 'autoaug_extend':
transform_train.transforms.insert(0, Augmentation(autoaug_policy()))
elif C.get()['aug'] in ['default']:
pass
else:
raise ValueError('not found augmentations. %s' % C.get()['aug'])
if C.get()['cutout'] > 0:
transform_train.transforms.append(CutoutDefault(C.get()['cutout']))
if dataset == 'BraTS':
total_trainset =
testset =
elif dataset == 'cifar10':
total_trainset = torchvision.datasets.CIFAR10(root=dataroot, train=True, download=True, transform=transform_train)
testset = torchvision.datasets.CIFAR10(root=dataroot, train=False, download=True, transform=transform_test)
elif dataset == 'reduced_cifar10':
total_trainset = torchvision.datasets.CIFAR10(root=dataroot, train=True, download=True, transform=transform_train)
sss = StratifiedShuffleSplit(n_splits=1, test_size=46000, random_state=0) # 4000 trainset
sss = sss.split(list(range(len(total_trainset))), total_trainset.targets)
train_idx, valid_idx = next(sss)
targets = [total_trainset.targets[idx] for idx in train_idx]
total_trainset = Subset(total_trainset, train_idx)
total_trainset.targets = targets
testset = torchvision.datasets.CIFAR10(root=dataroot, train=False, download=True, transform=transform_test)
elif dataset == 'cifar100':
total_trainset = torchvision.datasets.CIFAR100(root=dataroot, train=True, download=True, transform=transform_train)
testset = torchvision.datasets.CIFAR100(root=dataroot, train=False, download=True, transform=transform_test)
elif dataset == 'svhn':
trainset = torchvision.datasets.SVHN(root=dataroot, split='train', download=True, transform=transform_train)
extraset = torchvision.datasets.SVHN(root=dataroot, split='extra', download=True, transform=transform_train)
total_trainset = ConcatDataset([trainset, extraset])
testset = torchvision.datasets.SVHN(root=dataroot, split='test', download=True, transform=transform_test)
elif dataset == 'reduced_svhn':
total_trainset = torchvision.datasets.SVHN(root=dataroot, split='train', download=True, transform=transform_train)
sss = StratifiedShuffleSplit(n_splits=1, test_size=73257-1000, random_state=0) # 1000 trainset
sss = sss.split(list(range(len(total_trainset))), total_trainset.targets)
train_idx, valid_idx = next(sss)
targets = [total_trainset.targets[idx] for idx in train_idx]
total_trainset = Subset(total_trainset, train_idx)
total_trainset.targets = targets
testset = torchvision.datasets.SVHN(root=dataroot, split='test', download=True, transform=transform_test)
elif dataset == 'imagenet':
total_trainset = ImageNet(root=os.path.join(dataroot, 'imagenet-pytorch'), transform=transform_train)
testset = ImageNet(root=os.path.join(dataroot, 'imagenet-pytorch'), split='val', transform=transform_test)
# compatibility
total_trainset.targets = [lb for _, lb in total_trainset.samples]
elif dataset == 'reduced_imagenet':
# randomly chosen indices
# idx120 = sorted(random.sample(list(range(1000)), k=120))
idx120 = [16, 23, 52, 57, 76, 93, 95, 96, 99, 121, 122, 128, 148, 172, 181, 189, 202, 210, 232, 238, 257, 258, 259, 277, 283, 289, 295, 304, 307, 318, 322, 331, 337, 338, 345, 350, 361, 375, 376, 381, 388, 399, 401, 408, 424, 431, 432, 440, 447, 462, 464, 472, 483, 497, 506, 512, 530, 541, 553, 554, 557, 564, 570, 584, 612, 614, 619, 626, 631, 632, 650, 657, 658, 660, 674, 675, 680, 682, 691, 695, 699, 711, 734, 736, 741, 754, 757, 764, 769, 770, 780, 781, 787, 797, 799, 811, 822, 829, 830, 835, 837, 842, 843, 845, 873, 883, 897, 900, 902, 905, 913, 920, 925, 937, 938, 940, 941, 944, 949, 959]
total_trainset = ImageNet(root=os.path.join(dataroot, 'imagenet-pytorch'), transform=transform_train)
testset = ImageNet(root=os.path.join(dataroot, 'imagenet-pytorch'), split='val', transform=transform_test)
# compatibility
total_trainset.targets = [lb for _, lb in total_trainset.samples]
sss = StratifiedShuffleSplit(n_splits=1, test_size=len(total_trainset) - 50000, random_state=0) # 4000 trainset
sss = sss.split(list(range(len(total_trainset))), total_trainset.targets)
train_idx, valid_idx = next(sss)
# filter out
train_idx = list(filter(lambda x: total_trainset.labels[x] in idx120, train_idx))
valid_idx = list(filter(lambda x: total_trainset.labels[x] in idx120, valid_idx))
test_idx = list(filter(lambda x: testset.samples[x][1] in idx120, range(len(testset))))
targets = [idx120.index(total_trainset.targets[idx]) for idx in train_idx]
for idx in range(len(total_trainset.samples)):
if total_trainset.samples[idx][1] not in idx120:
continue
total_trainset.samples[idx] = (total_trainset.samples[idx][0], idx120.index(total_trainset.samples[idx][1]))
total_trainset = Subset(total_trainset, train_idx)
total_trainset.targets = targets
for idx in range(len(testset.samples)):
if testset.samples[idx][1] not in idx120:
continue
testset.samples[idx] = (testset.samples[idx][0], idx120.index(testset.samples[idx][1]))
testset = Subset(testset, test_idx)
print('reduced_imagenet train=', len(total_trainset))
else:
raise ValueError('invalid dataset name=%s' % dataset)
if total_aug is not None and augs is not None:
total_trainset.set_preaug(augs, total_aug)
print('set_preaug-')
train_sampler = None
if split > 0.0:
sss = StratifiedShuffleSplit(n_splits=5, test_size=split, random_state=0)
sss = sss.split(list(range(len(total_trainset))), total_trainset.targets)
for _ in range(split_idx + 1):
train_idx, valid_idx = next(sss)
if target_lb >= 0:
train_idx = [i for i in train_idx if total_trainset.targets[i] == target_lb]
valid_idx = [i for i in valid_idx if total_trainset.targets[i] == target_lb]
train_sampler = SubsetRandomSampler(train_idx)
valid_sampler = SubsetSampler(valid_idx)
if multinode:
train_sampler = torch.utils.data.distributed.DistributedSampler(Subset(total_trainset, train_idx), num_replicas=dist.get_world_size(), rank=dist.get_rank())
else:
valid_sampler = SubsetSampler([])
if multinode:
train_sampler = torch.utils.data.distributed.DistributedSampler(total_trainset, num_replicas=dist.get_world_size(), rank=dist.get_rank())
logger.info(f'----- dataset with DistributedSampler {dist.get_rank()}/{dist.get_world_size()}')
trainloader = torch.utils.data.DataLoader(
total_trainset, batch_size=batch, shuffle=True if train_sampler is None else False, num_workers=8, pin_memory=True,
sampler=train_sampler, drop_last=True)
validloader = torch.utils.data.DataLoader(
total_trainset, batch_size=batch, shuffle=False, num_workers=4, pin_memory=True,
sampler=valid_sampler, drop_last=False)
testloader = torch.utils.data.DataLoader(
testset, batch_size=batch, shuffle=False, num_workers=8, pin_memory=True,
drop_last=False
)
return train_sampler, trainloader, validloader, testloader
class CutoutDefault(object):
"""
Reference : https://github.com/quark0/darts/blob/master/cnn/utils.py
"""
def __init__(self, length):
self.length = length
def __call__(self, img):
h, w = img.size(1), img.size(2)
mask = np.ones((h, w), np.float32)
y = np.random.randint(h)
x = np.random.randint(w)
y1 = np.clip(y - self.length // 2, 0, h)
y2 = np.clip(y + self.length // 2, 0, h)
x1 = np.clip(x - self.length // 2, 0, w)
x2 = np.clip(x + self.length // 2, 0, w)
mask[y1: y2, x1: x2] = 0.
mask = torch.from_numpy(mask)
mask = mask.expand_as(img)
img *= mask
return img
class Augmentation(object):
def __init__(self, policies):
self.policies = policies
def __call__(self, img):
for _ in range(1):
policy = random.choice(self.policies)
for name, pr, level in policy:
if random.random() > pr:
continue
img = apply_augment(img, name, level)
return img
class EfficientNetRandomCrop:
def __init__(self, imgsize, min_covered=0.1, aspect_ratio_range=(3./4, 4./3), area_range=(0.08, 1.0), max_attempts=10):
assert 0.0 < min_covered
assert 0 < aspect_ratio_range[0] <= aspect_ratio_range[1]
assert 0 < area_range[0] <= area_range[1]
assert 1 <= max_attempts
self.min_covered = min_covered
self.aspect_ratio_range = aspect_ratio_range
self.area_range = area_range
self.max_attempts = max_attempts
self._fallback = EfficientNetCenterCrop(imgsize)
def __call__(self, img):
# https://github.com/tensorflow/tensorflow/blob/9274bcebb31322370139467039034f8ff852b004/tensorflow/core/kernels/sample_distorted_bounding_box_op.cc#L111
original_width, original_height = img.size
min_area = self.area_range[0] * (original_width * original_height)
max_area = self.area_range[1] * (original_width * original_height)
for _ in range(self.max_attempts):
aspect_ratio = random.uniform(*self.aspect_ratio_range)
height = int(round(math.sqrt(min_area / aspect_ratio)))
max_height = int(round(math.sqrt(max_area / aspect_ratio)))
if max_height * aspect_ratio > original_width:
max_height = (original_width + 0.5 - 1e-7) / aspect_ratio
max_height = int(max_height)
if max_height * aspect_ratio > original_width:
max_height -= 1
if max_height > original_height:
max_height = original_height
if height >= max_height:
height = max_height
height = int(round(random.uniform(height, max_height)))
width = int(round(height * aspect_ratio))
area = width * height
if area < min_area or area > max_area:
continue
if width > original_width or height > original_height:
continue
if area < self.min_covered * (original_width * original_height):
continue
if width == original_width and height == original_height:
return self._fallback(img) # https://github.com/tensorflow/tpu/blob/master/models/official/efficientnet/preprocessing.py#L102
x = random.randint(0, original_width - width)
y = random.randint(0, original_height - height)
return img.crop((x, y, x + width, y + height))
return self._fallback(img)
class EfficientNetCenterCrop:
def __init__(self, imgsize):
self.imgsize = imgsize
def __call__(self, img):
"""Crop the given PIL Image and resize it to desired size.
Args:
img (PIL Image): Image to be cropped. (0,0) denotes the top left corner of the image.
output_size (sequence or int): (height, width) of the crop box. If int,
it is used for both directions
Returns:
PIL Image: Cropped image.
"""
image_width, image_height = img.size
image_short = min(image_width, image_height)
crop_size = float(self.imgsize) / (self.imgsize + 32) * image_short
crop_height, crop_width = crop_size, crop_size
crop_top = int(round((image_height - crop_height) / 2.))
crop_left = int(round((image_width - crop_width) / 2.))
return img.crop((crop_left, crop_top, crop_left + crop_width, crop_top + crop_height))
class SubsetSampler(Sampler):
r"""Samples elements from a given list of indices, without replacement.
Arguments:
indices (sequence): a sequence of indices
"""
def __init__(self, indices):
self.indices = indices
def __iter__(self):
return (i for i in self.indices)
def __len__(self):
return len(self.indices)